PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024129-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 335aa    MW: 36912.6 Da    PI: 5.54
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024129-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-1244100255
                         HHHHHHHHHHHHHHHHHH.......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsa.......feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+e E+rRR++iN++       f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  WALNUT_00024129-RA  44 RSKHSETEQRRRSKINERqdyfvnlFQILRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 100
                         899*************866666666**********9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-1939120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4684299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1543127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-1444103No hitNo description
PfamPF000108.1E-1044100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-748105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVKSPKSDDH DHEEFEECDV VGTNGSCSRS GDGKSKDQKT TAHRSKHSET EQRRRSKINE  60
RQDYFVNLFQ ILRDIIPQND QKRDKASFLL EVIEYIQFLQ DKLNMYEGQY HGWSPEPKKL  120
IPWRNNCGPA ESIVDHSQVI ENGFGLENNV APPALLTNAQ NTLESELGTA AVYKALNHPT  180
GSATPAVPSN LQMKPNIFDP VVRGGVPAWS LHESISDAEN MPSQPQSQWW HARPYPTEDA  240
AQNNISEHEL AVDSGSVSIS SAYSQEILNS LTQELQSSGV DLSQANISVQ INAGKSANSA  300
LNAVASNSKV MAHTAVGSCH NDSGLAHKRL RTEES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482443.11e-127PREDICTED: transcription factor BIM3
RefseqXP_015387099.11e-127PREDICTED: transcription factor BIM3
TrEMBLA0A067FY891e-127A0A067FY89_CITSI; Uncharacterized protein
STRINGVIT_14s0083g00930.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-54BES1-interacting Myc-like protein 2